PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S26551.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 519aa    MW: 57380.9 Da    PI: 6.7265
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S26551.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.15.8e-15168227155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Jcr4S26551.10 168 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 227
                    57*******************666664477446*************************98 PP

2AP247.25.5e-15265314355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Jcr4S26551.10 265 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 314
                    9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-12168227IPR001471AP2/ERF domain
CDDcd000182.55E-23168237No hitNo description
SuperFamilySSF541712.48E-17168237IPR016177DNA-binding domain
SMARTSM003805.8E-30169241IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-16169236IPR001471AP2/ERF domain
PROSITE profilePS5103219.256169235IPR001471AP2/ERF domain
PRINTSPR003672.2E-6170181IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-18263324IPR016177DNA-binding domain
CDDcd000189.75E-25263324No hitNo description
SMARTSM003808.6E-33264328IPR001471AP2/ERF domain
PROSITE profilePS5103219.375264322IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-18264323IPR001471AP2/ERF domain
PfamPF008471.3E-9265314IPR001471AP2/ERF domain
PRINTSPR003672.2E-6304324IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MGSMNSNNWL SFPLSPTHSS LPPHLHTSHP QQFSLGLVTE TMDNPFQNQE WSLVNTQGSS  60
EVPKVADFLG VSKSENQSDL VAFNGLQAND SDYMFQSNSL LPVHNAVVAA STNYEFQENA  120
NNLQSLTLSM GSASGKASTC ETSGDNSTNT VEATAPRRTL DTFGQRTSIY RGVTRHRWTG  180
RYEAHLWDNS CRREGQSRKG RQVYLGGYDK EEKAARAYDL AALKYWGTST TTNFPISNYE  240
KELEEMKHMT RQEKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTEEE  300
AAEAYDIAAI KFRGLNAVTN FDMSRYDVKS ILESNTLPIG GGAAKRLKEA QAIESSRKRE  360
EMIALGSSFQ YGSSSSNNRL QAYSLMQSPF EQPQPLLTLQ NQDISQYTQD TASFNHQNYL  420
QTQLHLHQQS AASSNYLQQS SHQNPQFYNS YIQNNPALLH GLFNMGSSSS IVENNGSSSG  480
SYSGGYLGNS LGMASNSTGS NAVGSAEELA LVKVDYDMQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00368DAPTransfer from AT3G20840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089962.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 isoform X1
SwissprotQ5YGP80.0PLET1_ARATH; AP2-like ethylene-responsive transcription factor PLT1
TrEMBLB9GW950.0B9GW95_POPTR; Ovule development family protein
STRINGPOPTR_0003s20470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49423152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.10.0AP2 family protein